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Amanda Poholek - Assistant Professor and Director of NextGen Seq Core at University of Pittsburgh
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Amanda Poholek

Assistant Professor and Director of NextGen Seq Core at University of Pittsburgh
University of Pittsburgh • Pittsburgh • United States of America

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • ChIP-seq analysis
  • BS-seq analysis
Languages
  • English
Programming languages
  • R
  • Shell (Bash)

Fields of interest

RNA-seq analysis
Provides an online platform for normalization, calculation of performance…
Allows detection of collaborative transcription factor pairs. MMARGE consists…
Permits to reconstruct transcriptional regulatory networks. TReNA uses gene…
ChIP-seq analysis
Identifies transcription factors (TF) binding sites by combining bidirectional…
Allows detection of collaborative transcription factor pairs. MMARGE consists…
Permits to reconstruct transcriptional regulatory networks. TReNA uses gene…
BS-seq analysis
Annotates and filtrates variant files. VarAFT allows the comparison of several…
Predicts de novo profile generation based on sequence context. SPBuild…
Provides a conversion tool for GFF3 tool to legal EMBL format suitable for…