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Amanda Poholek - Assistant Professor and Director of NextGen Seq Core at University of Pittsburgh
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Amanda Poholek

Assistant Professor and Director of NextGen Seq Core at University of Pittsburgh
University of Pittsburgh • Pittsburgh • United States of America

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • ChIP-seq analysis
  • BS-seq analysis
Languages
  • English
Programming languages
  • R
  • Shell (Bash)

Fields of interest

RNA-seq analysis
Allows generation and evaluation of phylogenetic trees. UBCG is based on the…
Allows users to perform reconstruction of phylogenetic trees and ancestral…
Reports candidate transposable elements (TEs) to be considered in downstream…
ChIP-seq analysis
Permits to reconstruct transcriptional regulatory networks. TReNA uses gene…
Conducts RNA-seq read alignment and read counting from raw sequence reads to…
Predicts transcription factors whose genomic binding profile correlates with…
BS-seq analysis
Serves for Illumina short read sequencing data. PriLive allows users to remove…
Compresses coordinate sorted aligned SAM, BAM or CRAM files. Crumble is a…
Allows users to filter, convert and combine multiple data files produced by…