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Qingshan Ni - TCR sequencing
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Qingshan Ni

TCR sequencing
Third Military Medical University • Chongqing • China

Skills and expertise

Fields of interest
  • Immune system analysis
  • RNA-seq analysis
  • ChIP-seq analysis
Languages
  • Chinese
Programming languages
  • R
  • Ruby

Fields of interest

Immune system analysis
Calculates the probability of generating a given CDR3 amino acid sequence or…
Highlights antibodies with anomalous values compared to therapeutics. TAP…
Leverage features from local residue neighbourhoods and across the entire…
RNA-seq analysis
Predicts long non-coding RNAs (lncRNA) mechanisms by using both RNA-RNA and…
Builds genome-minimized strains. MinGenome excludes metabolic and regulatory…
Estimates species trees given a set of rooted gene trees. DynaDup is based on…
ChIP-seq analysis
Implements an indexing data structure for compacted de Bruijn graph (dBG) and…
Allows to detect gene families in transcriptomes under strong selection. FUSTr…
Allows users to deduce E-P links based on correlated activity patterns across…