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Raphael Schneider - bioinformatician
Open to new opportunities
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Open to new opportunities

Raphael Schneider

bioinformatician
Claude Bernard University Lyon 1 • Institut de Génomique Fonctionnelle de Lyon • Lyon • France

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • ChIP-seq analysis
Languages
  • English
  • French
Programming languages
  • Perl
  • Python
  • R

Favorites and Collections

Favorites

MACS
Desktop

Collections

No collections...

Work experience

Bioinformatician
IGFL - Lyon
November 2017 - Today
Bioinformatician
IGBMC - Strasbourg
September 2014 - June 2017

Bioinformatics projects

TOOLS MAINTAINED

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ViLoVar

Desktop

ViLoVar / Visualize Localization of Variants

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Identifies and allows visualization of variants in a given gene for multiple individuals simultaneously. ViLoVar can describe pathogenicity by exploiting the position of the variant in the gene. This…

Fields of interest

WGS analysis
Identifies somatic single nucleotide variants (SNVs). S22S detects somatic SNV…
Simulates different types of substitutions. MultinomialMutations integrates the…
Performs tree reconstruction based on the supermatrix paradigm. OneTwoTree is a…
RNA-seq analysis
Provides a deep neural network base caller for nanopore sequencing. Chiron…
Performs detection of RNA-seq differential expression (DE). RoMA is a DE…
Calculates the normalizing factors for zeroinflated sequencing data such as…
ChIP-seq analysis
Provides a web platform to execute analysis of somatic DNA mutations with…
Implements an indexing data structure for compacted de Bruijn graph (dBG) and…
Allows to compress DNA sequences, quality scores and read identifiers. FaStore…