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Rémi Denise - phylogenomic
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Rémi Denise

phylogenomic
French Institute of Health and Medical Research • Institut Pasteur • Paris • France

Skills and expertise

Fields of interest
  • WGS analysis
  • aCGH data analysis
  • NMR-based proteomics analysis
Languages
  • English
  • French
Programming languages
  • C
  • Python
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Evaluates rare short tandem repeat (STR) expansions from whole genome…
Deduces tumor purity and ploidy from tumor-normal whole genome sequencing (WGS)…
Investigates mutation count data to assess the signatures of mutational…
aCGH data analysis
Combines several steps for a high-quality probe and primer design for a variety…
Permits user to work on segmentation of genomic and epigenomic profiles. iSeg…
Finds cancer subtypes. Scluster is based on an adaptive sparse reduced-rank…
NMR-based proteomics analysis
Assists users to perform spectra analysis. Dumpling comprises the following…
Automates the elimination of noise peaks. Filt Robot employs convolutional…
Predicts absolute per-residue fluctuation from a three-dimensional protein…