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Rita Pacheco - Student
Open to new opportunities
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Open to new opportunities

Rita Pacheco

University of Porto • Porto • Portugal

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Metagenomic sequencing analysis
  • Gene expression array analysis
  • English
  • Portuguese
Programming languages
  • Python
  • R

Fields of interest

RNA-seq analysis
Maps bisulfite-treated short DNA reads to a reference genome. BisPin supports…
Predicts transcriptomic structural variants (TSVs) from RNA-seq data. SQUID is…
Generates and analyzes executable models from single-cell gene expression data.…
Metagenomic sequencing analysis
Permits intuitive quantitative analyses and comparative visualisation of…
Provides a method for inferring transmission events. BadTrIP models evolution…
Allows users to build a pan-genome data structure. seq-seq-pan is a software…
Gene expression array analysis
Supports the validation of experiments by annotating variants and prioritizing…
Searches specific gene expression pattern from time-series gene expression data…
Enables correction of batch effects in case-control microbiome studies.…