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Rodrigo Pereira - metagenomics and transcriptome
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Rodrigo Pereira

metagenomics and transcriptome
Universidade Federal da Grande Dourados • Dourados • Brazil

Skills and expertise

Fields of interest
  • WGS analysis
  • MS-based untargeted proteomics
  • Protein interaction analysis
  • English
  • Portuguese
Programming languages
  • Python

Fields of interest

WGS analysis
Provides a method that evaluates saturated DNA mixtures to identify saturated…
Consists of a multiple sequence alignment (MSA) tool based on T-Coffee (TC) to…
Introduces user-defined haplotype-phased allele-specific copy number events…
MS-based untargeted proteomics
Provides a quick navigation into any set of scores associated to the…
Detects proteolytic protein processing events that might occur during…
Adjoins the modeling of the MS2-isolation step into a deconvolution algorithm.…
Protein interaction analysis
Performs prediction of master regulators. TETRAMER is a Cytoscape App that (i)…
Predicts drug–target binding affinity using only sequences of proteins and…
Allows atomic-level, sequence-order independent comparison of ligand molecule…