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Roman Sasik - Bioinformatics Science
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Roman Sasik

Bioinformatics Science
University of California System • University of California, San Diego • San Diego • United States of America

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • ChIP-seq analysis
  • Gene expression array analysis
Languages
  • English
Programming languages
  • Fortran
  • Perl
  • R

TOOLS MAINTAINED

GSIA

Desktop

GSIA / Gene Set Information Analysis

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Gathers a set of statistical functions dedicated to the evaluation of information for gene sets with an underlying gene interaction network context. GSIA is an R package intending to furnish measures…

Fields of interest

RNA-seq analysis
Performs a structural annotation of protein-coding genes. TGFam-Finder…
Allows clustering of large-scale networks. HipMCL is a distributed-memory…
Assists users in annotating TP53 information derived from sequencing data.…
ChIP-seq analysis
Calculates average amino-acid identity (AAI) between a query proteome and all…
Provides several scripts to predict active enhancers and promoters in a cell…
Classifies protein sequence and identifies remote protein homology via…
Gene expression array analysis
Predicts de novo profile generation based on sequence context. SPBuild…
Provides an online platform for collecting, managing, analyzing, visualizing…
Searches specific gene expression pattern from time-series gene expression data…