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Mark Rose - Bioinformatics
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Mark Rose

Bioinformatics
Syngenta (Switzerland) • Syngenta (United States) • Greensboro • United States of America

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Perl

Fields of interest

De novo sequencing analysis
Assists in small-variant detection. Pisces is designed to be used on germline…
Represents all sequence reads and their similarity relationships using a graph…
Discovers large indels using optical maps (OM) reads with weak signal. OMIndel…
RNA-seq analysis
Identifies protein-lncRNA interactions. PLIPCOM is constructed from three…
Discovers large indels using optical maps (OM) reads with weak signal. OMIndel…
Identifies genetic variants that overlap with genes coding for lincRNA or miRNA…
Metagenomic sequencing analysis
Simulates reads from evolving microbial populations. MetaSMC supports all…
Serves as a function prediction pipeline to detect protein-level annotations to…
Assists users for visualizing ancestry data. AncestryView first proceeds by…