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Mark Rose - Bioinformatics
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Mark Rose

Bioinformatics
Syngenta (Switzerland) • Syngenta (United States) • Greensboro • United States of America

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Perl

Fields of interest

De novo sequencing analysis
Provides a method for inferring transmission events. BadTrIP models evolution…
Rebuilds sequence(s) associated with individual haplotypes. Hmmfreq is an…
Breaks the annotated genomes of a large number of strain into genes and further…
RNA-seq analysis
Identifies optimal number of clusters while partitioning data. Shrinkage…
Permits identification of alternative first exons (FEs) and alternative tandem…
Gathers investigations of phytohormone responses. GSHR employs the integration…
Metagenomic sequencing analysis
Allows microbial metataxonomic investigation. BTW is composed of a set of tools…
Permits to analyze large species-wide bacterial population genomic datasets.…
Provides a read alignment software for whole genome sequencing (WGS). CS-BWAMEM…