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Rostyslav Makarenko - yeast genomics
Open to new opportunities
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Open to new opportunities

Rostyslav Makarenko

yeast genomics
French Institute of Health and Medical Research • Institut Pasteur • Paris • France

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • aCGH data analysis
Languages
  • English
  • French
  • German
  • Russian
Programming languages
  • Python
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Clusters variants into clones. QuantumClone applies an expectation-maximization…
Compresses coordinate sorted aligned SAM, BAM or CRAM files. Crumble is a…
Permits users to test gene-set enrichment directly from de novo (DN) and rare…
RNA-seq analysis
Calculates average amino-acid identity (AAI) between a query proteome and all…
Compares differential abundance and expression methods on a targeted dataset.…
Allows real-time interaction, analysis and visualization of spatial…
aCGH data analysis
Finds cancer subtypes. Scluster is based on an adaptive sparse reduced-rank…
Enables spatial mapping of RNA-seq transcript data onto high resolution tissue…
Analyzes next-generation sequencing (NGS) from experiments using unique…