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Ruofan XIA - Researcher
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Ruofan XIA

University of South Carolina System • University of South Carolina • Columbia • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • scRNA-seq analysis
  • English
Programming languages
  • Java

Fields of interest

WGS analysis
Suits for automated pipeline optimization. ToTem enables the integration of a…
Handles arbitrarily large multi-sampled files to produces mutation spectra…
Enables to build custom genome browsers. GIVe is a programming library allowing…
RNA-seq analysis
Provides a de novo assembler. STAble is composed of three modules: (1)…
Allows users to process targeted enriched Illumina sequences from raw reads to…
Permits exome, whole-genome, and targeted sequencing analyses. Mosdepth is a…
scRNA-seq analysis
Incorporates and perform a batch-correction for heterogeneous single-cell RNA…
Evaluates RNA-seq alignment results. RNAseqEval is a package that can be used…
Performs common tasks in metagenomic data analysis from raw read quality…