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S. Alaimo - Bioinformatician
Open to new opportunities
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Open to new opportunities

S. Alaimo

Bioinformatician
University of Catania • Catania • Italy

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Metagenomic sequencing analysis
  • Gene expression array analysis
Languages
  • English
  • Italian
Programming languages
  • C
  • C++
  • Java
  • Javascript
  • PHP
  • R
  • Shell (Bash)

TOOLS MAINTAINED

MITHrIL

Algorithm

MITHrIL / Mirna enrIched paTHway Impact anaLysis

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An algorithm developed for the analysis of signaling pathways. MITHrIL augments pathways with missing regulatory elements, such as microRNAs, and their interactions with genes. The method takes as…

Fields of interest

RNA-seq analysis
Permits cluster identification using ensemble clustering. diceR assists users…
Allows detection of a subset of transcriptomic or methylomic residues. TriVote…
Merges clusters obtained through different methods. polyClustR is an R package…
Metagenomic sequencing analysis
Allows users to perform exact pairwise alignment. RecNW is an application that…
Provides assistance for clustering high-dimensional sequence data. LSH-SNN…
Manages information related with metabolite identification. WebMetabase offers…
Gene expression array analysis
Determines the toxicity related end-points of nanoparticles (NPs). toxFlow is…
Models data to maintain realistic patterns of variation and correlation. FANGS…
Analyzes RNA-seq count data. dNBFA is built on a Bayesian covariate-dependent…