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S Modha - High throughput sequencing data analysis, data mining
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Open to new opportunities

S Modha

High throughput sequencing data analysis, data mining
University of Glasgow • Glasgow • United Kingdom

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • English
Programming languages
  • Python
  • Shell (Bash)

TOOLS MAINTAINED

ViCTree

Desktop

ViCTree

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Produces maximum-likelihood phylogenetic trees and their associated distance data. VICTree is an application synchronized with GenBank viral sequences through a Github repository. After the alignment…

Fields of interest

De novo sequencing analysis
Defines the distribution of accessory genomic elements (AGEs) within a…
Calculates average amino-acid identity (AAI) between a query proteome and all…
Performs a genome assembly. MELC Genomics is a platform with independent…
RNA-seq analysis
Allows users to develop multiplex primer schemes. Primal Scheme is a web…
Merges clusters obtained through different methods. polyClustR is an R package…
Encodes string sequence into a mathematical representation. Nucl2Vec aims to…
Gene expression array analysis
Performs secure analyses and visualization of users’ private functional…
Enables visualization and exploration of next-generation sequencing (NGS) data.…
Assists users for visualizing ancestry data. AncestryView first proceeds by…