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SAKSHI CHAUDHARY - Genomics and Transcriptomics work
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SAKSHI CHAUDHARY

Genomics and Transcriptomics work
Indian Council of Agricultural Research • National Bureau of Plant Genetic Resources • New Delhi • India

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • English
Programming languages
  • Perl

TOOLS MAINTAINED

FabElm_BarcodeDb

Dataset

FabElm_BarcodeDb

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Provides access to a maturaseK (matK) barcode legumes resource. FabElm_BarcodeDb is built on available sequence resources and gathers more than 3600 complete non-redundant matK sequences of…

Fields of interest

WGS analysis
Predicts de novo profile generation based on sequence context. SPBuild…
Identifies and validates deletion structural variation (SV) in trios with whole…
Facilitates phylogenomic analyses on microeukaryotes. GPSit is an automated…
RNA-seq analysis
Compares differential abundance and expression methods on a targeted dataset.…
Allows users to distinguish human and mouse reads in High-Throughput Sequencing…
Provides a sparse network component analysis algorithm. SparseNCA is a two…
Gene expression array analysis
Stores projects and creates a directory of analysed results and parameter.…
Provides a quick navigation into any set of scores associated to the…
Analyzes RNA-seq count data. dNBFA is built on a Bayesian covariate-dependent…