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SHUNGO DESHIMARU - biochemistry
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University of Tokyo • Tokyo • Japan

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Gene expression array analysis
  • Protein interaction analysis
  • Japanese
Programming languages
  • Perl

Fields of interest

RNA-seq analysis
An artificial neural networks (ANN) framework to predict patient prognosis from…
Consists of a genomic context explorer. GeneSpy is a program that aims to…
Assists users in reading TIGER-rate file or other rate files. RatePartitions…
Gene expression array analysis
Contains a library to process over- and under-representation of certain gene…
Assists users for visualizing ancestry data. AncestryView first proceeds by…
Enables to build custom genome browsers. GIVe is a programming library allowing…
Protein interaction analysis
Predicts protein cavity and allows functional analyses. CavityPlus can…
Assesses protein-protein interactions (PPIs). maxent-ppi combines an…
Gathers a set of statistical functions dedicated to the evaluation of…