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Saba Ghaffari - Computer Science Graduate Research Assistant
Open to new opportunities
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Open to new opportunities

Saba Ghaffari

Computer Science Graduate Research Assistant
University of Illinois System • University of Illinois at Urbana Champaign • Urbana • United States of America

Skills and expertise

Fields of interest
  • ChIP-seq analysis
  • DNA methylation array analysis
  • Gene expression array analysis
Languages
  • English
Programming languages
  • C
  • C++
  • Java
  • MATLAB
  • Python

Fields of interest

ChIP-seq analysis
Provides a web platform to execute analysis of somatic DNA mutations with…
Serves to ChIP-seq Wig data. Wig is a standard file format, which in this…
Assists users to observe the potential function of new genes according to those…
DNA methylation array analysis
Enables the application of gene set tests (GST) in the absence of large parts…
Removes the positional effects and batch effects in data preprocessing.…
Normalizes measurement of long gene expression (LGE) within RNA-seq and…
Gene expression array analysis
Enables visualization and exploration of next-generation sequencing (NGS) data.…
Allows clustering of large-scale networks. HipMCL is a distributed-memory…
Analyzes the association of gene expression indices with interval times. GAIT…