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SaltyStudent - I make scripts with a name finishing by "-or"
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SaltyStudent

I make scripts with a name finishing by "-or"
French Institute of Health and Medical Research • Paris • France

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • French
Programming languages
  • R

TOOLS MAINTAINED

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K-merator

Desktop

K-merator

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Investigates transcriptional signatures in large RNAseq datasets. K-merator is a software intending to consider the decomposition of transcript sequence into k-mers to generate a set of tags. The…

Fields of interest

De novo sequencing analysis
Provides a visualization engine module. genomeview was developed for both…
Provides a web platform to execute analysis of somatic DNA mutations with…
Combines structural variation (SV) calls from different algorithms to reduce…
RNA-seq analysis
Extends the Integrative Genomics Viewer (IGV) with feature for curation…
Builds genome-minimized strains. MinGenome excludes metabolic and regulatory…
Analyzes RNA-seq count data. dNBFA is built on a Bayesian covariate-dependent…
Gene expression array analysis
Supplies a protein homology search method alternative to BLAST. TOPAZ is a…
Determines the toxicity related end-points of nanoparticles (NPs). toxFlow is…
Provides a neighbor protein structure retrieval method. ContactLib scans…