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Saptarathi Deb - Working on gene regulatory networks
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Saptarathi Deb

Working on gene regulatory networks
Institute of Bioinformatics and Applied Biotechnology • Bengaluru • India

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Protein interaction analysis
  • English
Programming languages
  • C
  • C++
  • Java
  • Perl
  • Python
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Assists for profiling circulating tumor DNA (ctDNA). NG-TAS features several…
Allows users to distinguish human and mouse reads in High-Throughput Sequencing…
Allows to compress DNA sequences, quality scores and read identifiers. FaStore…
RNA-seq analysis
Predicts de novo profile generation based on sequence context. SPBuild…
Generates a tiered report that will aid the interpretation of individual cancer…
Provides a platform to build reproducible and flexible pipelines for scalable…
Protein interaction analysis
Allows visualization and prediction of potential interaction regions at protein…
Predicts protein cavity and allows functional analyses. CavityPlus can…
Permits multi-sample integration and processing of (1) known annotations from…