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Sara El-Metwally - Assistant Professor in Computer Science
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Sara El-Metwally

Assistant Professor in Computer Science
Mansoura University • Al Manşūrah • Egypt

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • Arabic
  • English
Programming languages
  • C#
  • C++
  • Perl
  • Python
  • R

TOOLS MAINTAINED

LightAssembler

Desktop

LightAssembler

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A lightweight assembly algorithm designed to be executed on a desktop machine. It uses a pair of cache oblivious Bloom filters, one holding a uniform sample of g-spaced sequenced k-mers and the other…

Fields of interest

De novo sequencing analysis
Compresses genome sequencing data. BdBG dispatches similar reads into the same…
Assists users with key gene identification in immune diseases. Gene Ranke is an…
Enables the discovery, ranking, and clustering of colinear syntenic blocks…
RNA-seq analysis
Compresses genome sequencing data. BdBG dispatches similar reads into the same…
Aims to infer causal graphs. MRPC is a machine learning algorithm that…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…
Metagenomic sequencing analysis
Compresses genome sequencing data. BdBG dispatches similar reads into the same…
Enables the discovery, ranking, and clustering of colinear syntenic blocks…
Identifies variants and assigns lineage from Mycobacterium tuberculosis complex…