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Saskia Wutke - sawfly phylogenetics based on UCEs
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Saskia Wutke

sawfly phylogenetics based on UCEs
University of Eastern Finland • Kuopio • Finland

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Consists of a method for calling of copy number alterations (CNAs) from…
Simulates the entire procedure of Nanopore sequencing. DeepSimulator can mimic…
Serves as a dynamic alignment-free and reference-free read compression tool.…
RNA-seq analysis
Provides a neighbor protein structure retrieval method. ContactLib scans…
Assists users in reading TIGER-rate file or other rate files. RatePartitions…
Performs tree reconstruction based on the supermatrix paradigm. OneTwoTree is a…
Metagenomic sequencing analysis
Enables genotyping and variant annotation of resequencing data produced by…
Conducts RNA-seq read alignment and read counting from raw sequence reads to…
Contains a library to process over- and under-representation of certain gene…