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Savannah Neu - Studying the microbiome in autoimmune disease
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Savannah Neu

Studying the microbiome in autoimmune disease
Medical College of Wisconsin • Milwaukee • United States of America

Skills and expertise

Fields of interest
  • Immune system analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Java

Fields of interest

Immune system analysis
Enables users to predict of epitope-specific T-cell receptor (TCR) sequences.…
Detects perturbed molecular processes in complex human diseases. MultiPLIER…
Calculates the probability of generating a given CDR3 amino acid sequence or…
RNA-seq analysis
Performs a structural annotation of protein-coding genes. TGFam-Finder…
Quantifies and displays all the clusters formed by the genes, given a list of…
Permits identification of alternative first exons (FEs) and alternative tandem…
Metagenomic sequencing analysis
Serves for eukaryotic sequence identification and can be applied to…
Enumerates conserved blocks that are centered in small components of a given…
Provides a method for inferring transmission events. BadTrIP models evolution…