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Shafi Kuchay - research
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Shafi Kuchay

research
Howard Hughes Medical Institute • Chevy Chase • United States of America

Skills and expertise

Fields of interest
  • BS-seq analysis
  • Gene expression array analysis
  • MS-based untargeted proteomics
Languages
  • English

Fields of interest

BS-seq analysis
Assists users in selecting primers for amplification of complete CpG islands.…
Processes raw reads to count tables for RNA-seq data using Unique Molecular…
Serves to ChIP-seq Wig data. Wig is a standard file format, which in this…
Gene expression array analysis
Enables adaptive correlation and covariance matrix shrinkage. CorShrink is a…
Searches specific gene expression pattern from time-series gene expression data…
Enables evaluation, filtering, and analysis of gene models, as well as…
MS-based untargeted proteomics
Allows for deeper insights into tandem mass spectra. CharmeRT is a workflow…
Identifies and quantifies spectral library members within data-independent…
Permits users to import, integrate, manage and compare numerous proteomics…