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Shafi Mahmud

student
University of Rajshahi • Rājshāhi • Bangladesh

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • Arabic

Fields of interest

De novo sequencing analysis
Permits exome, whole-genome, and targeted sequencing analyses. Mosdepth is a…
Generates and analyzes whole or partial viral genomes from next-generation…
Allows researchers to directly retrieve the annotation of a hit from the…
RNA-seq analysis
Allows users to return all read mappings within a given edit distance. FEM is…
Allows detection of a subset of transcriptomic or methylomic residues. TriVote…
Allows to detect gene families in transcriptomes under strong selection. FUSTr…
Gene expression array analysis
Allows to rank, filter and explore cancer genomics data (genes, cell lines and…
Enables correction of batch effects in case-control microbiome studies.…
Aims to characterize non-model organisms. IDP-denovo allows users to handle…