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Mohamed Shahin - Researcg
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Mohamed Shahin

State University System of Florida • University of Florida • Gainesville • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • MS-based untargeted metabolomics
  • English
Programming languages
  • Python
  • R

Fields of interest

WGS analysis
Finds and genotypes non-allelic homologous recombination (NAHR) mediated…
Detects pathogens for both simulated and real diagnostic applications. PAIPline…
Furnishes method for genotyping and characterizing short tandem repeats (STR)…
RNA-seq analysis
Implements an indexing data structure for compacted de Bruijn graph (dBG) and…
Serves to ChIP-seq Wig data. Wig is a standard file format, which in this…
Enables genotyping and variant annotation of resequencing data produced by…
MS-based untargeted metabolomics
Investigates metabolites and their combinations in diseases. The program is…
Adjoins the modeling of the MS2-isolation step into a deconvolution algorithm.…
Consists of a parsimonious charge deconvolution algorithm that produces fewer…