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Shailesh Kumar - bioinformatics
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Shailesh Kumar

bioinformatics
Ministry of Science and Technology • National Institute of Plant Genome Research • New Delhi • India

Skills and expertise

Fields of interest
  • Immune system analysis
  • Gene expression array analysis
  • SPIM
Languages
  • English

Reviews and Discussions

LATEST REVIEWS

EricScript 2018-09-19, 06:31:24
This is a very good tool to find the fusion transcripts in RNA-Seq datasets. I have cited this tool in my publications. We have analysed 10,000 paired-end RNA-Seq datasets with this tool. Very useful.
tDRmapper 2018-09-19, 06:29:20
It's a very good tool to find the tRFs in small RNA-seq datasets. I am loving it.

LATEST DISCUSSIONS

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Bioinformatics projects

TOOLS MAINTAINED

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PtRFdb

Dataset

PtRFdb / Plants transfert RNA-derived Fragments database

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Contains information on plant transfer RNA-derived fragments. PtRFdb is an online repository that provides two user-friendly options to search transfer RNA-derived fragments (tRFs) from different…

Fields of interest

Immune system analysis
Performs an unsupervised data structure deconvolution and mapping to external…
Assists users in detecting antigenic variance. CE-BLAST is an online tool that…
Leverage features from local residue neighbourhoods and across the entire…
Gene expression array analysis
Recognizes spatiotemporal relationships in the human brain. brainImageR offers…
Gathers investigations of phytohormone responses. GSHR employs the integration…
Allows users to perform clustering analysis. NNC is a method based on k-means…
SPIM
Consists of a cloud based deep learning solution for image segmentation of…
Mimics wave-optical image formation in light-sheet microscopes. Biobeam…
Enables high speed three-dimensional imaging of large samples at high…