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ShannonDaddy - next generation sequencing data analysis, liquid biopsy, tumor,metagenomics
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ShannonDaddy

next generation sequencing data analysis, liquid biopsy, tumor,metagenomics

Skills and expertise

Fields of interest
  • WGS analysis
  • WES analysis
  • scRNA-seq analysis
Languages
  • Chinese
  • English
Programming languages
  • Java
  • Perl
  • Python
  • R

Fields of interest

WGS analysis
Allows manipulation of biological objects including sequences, alignments, and…
Allows users to extract a statistically significant subset of a determined set…
Provides a mutation caller for mutation accumulation (MA) experiments.…
WES analysis
Refines regulatory motifs. LMMO consists of a large-margin-type algorithm that…
Provides a tool to select the band width according to the read’s error rates.…
Identifies somatic single nucleotide variants (SNVs). S22S detects somatic SNV…
scRNA-seq analysis
Allows users to identify minority cell types. LSPCA consists of a dimension…
Investigates cell functions based on single cell RNA (scRNA)-seq data. Corr…
Quantifies fate bias, manifested by subtle lineage specific transcriptome…