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Alex Shchetinin - NGS and bioinformatics
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Alex Shchetinin

NGS and bioinformatics
Department of Medical Sciences • D.I. Ivanovsky Institute of Virology Russian Academy of Medical Sciences • Moscow • Russia

Skills and expertise

Fields of interest
  • Genome edition
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
  • English
  • Portuguese
  • Russian
Programming languages
  • Pascal
  • Python
  • Shell (Bash)

Fields of interest

Genome edition
Serves as a calculation and visualization tool for high-throughput CRISPR…
Constructs optimal gRNAs for the CRISPR-Cpf1 system. CRISPR-DT can take into…
Predicts model for single guide RNA (sgRNA) on-target knockout efficacy and…
De novo sequencing analysis
Evolves phenotypic models of cellular processes. phievo is an evolutionary…
Serves for Illumina short read sequencing data. PriLive allows users to remove…
Permits users to realize de novo assembling for recovering viral haplotypes…
Metagenomic sequencing analysis
Simplifies downstream utilization of high-throughput sequencing (HTS) data.…
Serves as a hybrid multiobjective memetic metaheuristic for multiple sequence…
Provides a method for phylogenetic reconstruction SAMedian calculates the…