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Shengwei Hou - Bioinformatician
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Shengwei Hou

Bioinformatician
University of Freiburg • Freiburg • Germany

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • ChIP-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Python

Fields of interest

RNA-seq analysis
Allows users to perform reconstruction of phylogenetic trees and ancestral…
Estimates gene expression levels ab initio from sequences. ExPecto is based on…
Provides a collection of clustering similarity measures for all three…
ChIP-seq analysis
Rectifies errors in long-read sequences. FMLRC employs the FM-index to…
Contains a library to process over- and under-representation of certain gene…
Predicts differential gene expression using histone modifications (HMs).…
Metagenomic sequencing analysis
Makes base calls in low coverage regions. PBHoover is a consensus and…
Allows users to optimize a scoring function for pairwise-profile alignment…
Maps reads against multiple reference genomes. PanVC is designed for variant…