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Shuhui Song - Bioinformatics
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Shuhui Song

Bioinformatics
Chinese Academy of Sciences • Beijing • China

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • Chinese
Programming languages
  • Perl

TOOLS MAINTAINED

GVM

Dataset

GVM / Genome Variation Map

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Gathers information about genome variations. GVM is an online resource that allows users to obtain data on single nucleotide polymorphisms (SNPs) and small insertions and deletions (INDEL), with…
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wapRNA

Desktop
Web

wapRNA

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Allows users simultaneously perform mRNA and miRNA expression analysis. wapRNA is a web application that includes major processes for the next-generation mRNA or miRNA data analysis, including…

Fields of interest

WGS analysis
Allows users to analyze large high-throughput datasets with several conditions…
Allows users to write pipelines in the Go programming language. SciPipe is a…
Deduces phylogenetic in the human immunodeficiency virus (HIV) drug resistance…
RNA-seq analysis
Uses existing tools from the Galaxy ToolShed, as well as providing additional…
Allows users to conduct large-scale comparisons of their results with thousands…
Permits cluster identification using ensemble clustering. diceR assists users…
Gene expression array analysis
Enables adaptive correlation and covariance matrix shrinkage. CorShrink is a…
Allows users to see expression profiles, to examine expression specificity,…
Enables to build custom genome browsers. GIVe is a programming library allowing…