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Simon Couvreur

University of Antwerp • Antwerpen • Belgium

Skills and expertise

Fields of interest
  • Immune system analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
  • English
  • French
Programming languages
  • R
  • Shell (Bash)

Fields of interest

Immune system analysis
Highlights antibodies with anomalous values compared to therapeutics. TAP…
Enables users to predict of epitope-specific T-cell receptor (TCR) sequences.…
Models tumor immune evasion by integrating expression signatures of T cell…
De novo sequencing analysis
Calculates anchor points for genome alignment. Spaced Anchor is a pipeline that…
Enables large-scale metagenome and transcriptome reads clustering. SpaRC is an…
Detects partial haplotype matches in a given cohort. fastLS consists of a set…
Metagenomic sequencing analysis
Allows users to compare genomic structures and annotations across multiple…
Determines bacterial plasmid sequences in genomic and metagenomic assemblies.…
Allows k-mer-based analysis of large collections of sequenced samples. Kmer-db…