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Simon Schafer - stem cell research; neuroscience
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Simon Schafer

stem cell research; neuroscience
Salk Institute for Biological Studies • La Jolla • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Protein interaction analysis
Languages
  • English
Programming languages
  • Python
  • R

Fields of interest

WGS analysis
Assists users in incorporating expert feedback about the impact of genomic…
Permits users to cluster and visualize samples based on DNA mismatch patterns.…
Exploits identity by descent (IBD) information to generate genotype imputation…
RNA-seq analysis
Permits researchers to conduct investigation and construct high-quality…
Calculates the normalizing factors for zeroinflated sequencing data such as…
Consists of a multiple sequence alignment (MSA) tool based on T-Coffee (TC) to…
Protein interaction analysis
Performs prediction of master regulators. TETRAMER is a Cytoscape App that (i)…
Identifies altered subnetworks. Hierarchical HotNet is a method that jointly…
Aggregates multiples types of data to determine transcription factors (TFs)…