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Simon fraser - biologist
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Simon fraser

biologist
BC Cancer Agency • Vancouver • Canada

Skills and expertise

Fields of interest
  • WGS analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • English
Programming languages
  • MATLAB
  • Python
  • R

Fields of interest

WGS analysis
Maps ethyl methanesulfonate (EMS)-induced mutations in forward genetic screens…
Enables distributed, likelihood-free inference for computationally demanding…
Aligns population origins from non-cancer single nucleotide polymorphism (SNP)…
RNA-seq analysis
Provides a read alignment software for whole genome sequencing (WGS). CS-BWAMEM…
Serves for visualization of splicing events across multiple samples. ggsashimi…
Searches specific gene expression pattern from time-series gene expression data…
Gene expression array analysis
Aims to characterize non-model organisms. IDP-denovo allows users to handle…
Determines the toxicity related end-points of nanoparticles (NPs). toxFlow is…
Enables the application of gene set tests (GST) in the absence of large parts…