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Pablo Smircich - Parasite genomics
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Pablo Smircich

Parasite genomics
Ministerio de Educaci√≥n y Cultura • Instituto de Investigaciones Biol√≥gicas Clemente Estable • Montevideo • Uruguay

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • RNA-seq analysis
  • Spanish
Programming languages
  • Python

Reviews and Discussions


Artemis 2017-11-10, 22:27:32
The Artemis genome browser is also a feature rich annotation tool. I use it frequently when I need to view my own tracks, either annotation or quantitative information. One of the best and I think…


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Fields of interest

WGS analysis
Recognizes cancer-related mutation clusters. DMCM is based on kernel density…
Predicts de novo profile generation based on sequence context. SPBuild…
Clusters tumors based on the somatic mutation spectra of the putative cancer…
De novo sequencing analysis
Extends the Integrative Genomics Viewer (IGV) with feature for curation…
Allows comparison and separation of orthology relationships. CAT uses the…
Registers and associates the barcode data required to order and orient draft…
RNA-seq analysis
Constructs publication-quality visualizations from Cuffdiff, edgeR, and DESeq2.…
Predicts protein-coding potential on transcripts. mRNN is capable of learning…
Contains a library to process over- and under-representation of certain gene…