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Sophie Marre - Postdoctoral fellow
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Sophie Marre

Postdoctoral fellow
University of Clermont Auvergne • Clermont-Ferrand • France

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
  • English
  • French

Fields of interest

De novo sequencing analysis
Provides an approach for integrating transcript assemblies. Mikado is a…
Searches imperfection-tolerant symmetric motifs at genome wide scale. NeSSie…
Allows users to construct targeted pseudo-contigs generated by assembling reads…
RNA-seq analysis
Provides a collection of clustering similarity measures for all three…
Predicts functions of no-knowledge proteins, particularly for those in the…
Assists in analyses of gene regulator. This package offers R modules to (i)…
Metagenomic sequencing analysis
Provides a toolkit to analyze and visualize protein domain architectures. HCA…
Integrates multi-omics profiles for phenotype prediction. iOmicsPASS utilizes…
Maps reads against multiple reference genomes. PanVC is designed for variant…