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Alexandre Soriano - NGS analyses
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Alexandre Soriano

NGS analyses
French National Institute for Agricultural Research • Centre de Montpellier • Montpellier • France

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • RNA-seq analysis
Languages
  • English
  • French
Programming languages
  • Perl
  • Python
  • R

Fields of interest

WGS analysis
Provides a web platform to execute analysis of somatic DNA mutations with…
Identifies, classifies and annotates transposable elements (TEs) of non-model…
Exploits identity by descent (IBD) information to generate genotype imputation…
De novo sequencing analysis
Predicts AsCpf1 (Cpf1 from Acidaminococcus sp. BV3L6) activity based on target…
Provides a method for inferring transmission events. BadTrIP models evolution…
Simulates various mating processes. MatSim allows users to mimic both discrete…
RNA-seq analysis
Provides a tool to select the band width according to the read’s error rates.…
Provides a platform to build reproducible and flexible pipelines for scalable…
Offers a platform for DNA-protein aligning. AC-DIAMOND intends to furnish a…