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Stefanie Prast-Nielsen - Metagenomics at different body sites
Open to new opportunities
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Open to new opportunities

Stefanie Prast-Nielsen

Metagenomics at different body sites
Karolinska Institute • Stockholm • Sweden

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Metagenomic sequencing analysis
  • MS-based untargeted metabolomics
Languages
  • English

Fields of interest

RNA-seq analysis
Allows users to process ChIP-seq data sets from raw reads to accurate…
Analyzes structural variants (SVs) and allele-specific copy numbers of genomic…
Serves for studying differential RNA editing. DRETools is able to find…
Metagenomic sequencing analysis
Enhances sequencing depth in low coverage areas with CIGAR string correction.…
Discovers, delineates and structures metagenomic species pangenomes (MSPs) from…
Predicts de novo profile generation based on sequence context. SPBuild…
MS-based untargeted metabolomics
Provides a web server of in silico metabolization of metabolites. MetWork is an…
Measures parsimonious metabolic networks for generating metabolites. GridProd…
Recognizes and explores all families of species in a microbiota enabling…