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Steve Baeyen - plant pathogen genomes and molecular ecology analysis
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Steve Baeyen

plant pathogen genomes and molecular ecology analysis
Instituut voor Landbouw en Visserijonderzoek • Merelbeke • Belgium

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Perl
  • PHP
  • Python
  • R
  • Shell (Bash)

Fields of interest

De novo sequencing analysis
Makes base calls in low coverage regions. PBHoover is a consensus and…
Aims to distinguish the distribution of base frequencies at variable sites for…
Provides a tool for the inference of viral transmissions. QUENTIN incorporates…
RNA-seq analysis
Maps reads on a reference genome and then analyzes them. FaRLine employs a…
Provides an approach for integrating transcript assemblies. Mikado is a…
Makes base calls in low coverage regions. PBHoover is a consensus and…
Metagenomic sequencing analysis
Allows users to discover a family of binary/ternary/ratio (BTR) models with…
Provides a method for studying population-scale microbiome. tmap enables the…
Performs tree reconstruction based on the supermatrix paradigm. OneTwoTree is a…