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Sudeep Ghimire

student
South Dakota State University • Brookings • United States of America

Skills and expertise

Fields of interest
  • WGS analysis
  • Metagenomic sequencing analysis
  • Protein interaction analysis
Languages
  • English

Fields of interest

WGS analysis
Identifies transposable elements (TEs) of a particular order and classifies…
Genotypes normal and expanded tandem repeats (TRs) from next-generation…
Detects structural variants (SVs) and insertion and deletion genome-wide…
Metagenomic sequencing analysis
Breaks the annotated genomes of a large number of strain into genes and further…
Conducts RNA-seq read alignment and read counting from raw sequence reads to…
Generates clustering trees and provides a visualization feature for…
Protein interaction analysis
Permits users to map multiple types of omics data to pathways without loss of…
Evaluates binding energy changes upon amino-acid mutations. EasyE is a global…
Identifies network motif modules in integrated gene regulatory networks in…