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Itsuro Sugimura - Molecular biology, Microbiology
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Itsuro Sugimura

Molecular biology, Microbiology
Hokkaido University • Sapporo • Japan

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Metagenomic sequencing analysis
Languages
  • English
  • Japanese
Programming languages
  • Python

Fields of interest

De novo sequencing analysis
Desktop
hts-nim
Provides a library written in Nim programming language that suits for simple…
Desktop
BAUM
Allows users to perform reference-assisted assembly or improve genome assembly…
Desktop
MetaMap
Permits users to screen existing human RNA-seq datasets in order to detect the…
RNA-seq analysis
Desktop
mRNN
Predicts protein-coding potential on transcripts. mRNN is capable of learning…
Algorithm
NetworkProfiler
Creates gene networks for a target sample in both dense and sparse region.…
Desktop
APAtrap
Identifies novel 3’ Untranslated Transcribed Region (UTR) and 3’ UTR…
Metagenomic sequencing analysis
Desktop
GCtree
Handles repeated sequences for phylogenic inference. GCTree allows users to…
Desktop
MetaMap
Permits users to screen existing human RNA-seq datasets in order to detect the…
Desktop
BAND_DYN_PROG
Provides a tool to select the band width according to the read’s error rates.…
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