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Sukanta Mondal - Bioinformatics and Computational Biology
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Open to new opportunities

Sukanta Mondal

Bioinformatics and Computational Biology
Birla Institute of Technology and Science • Pilāni • India

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Gene expression microarray analysis
  • Protein interaction analysis
Languages
  • English
Programming languages
  • Python

TOOLS MAINTAINED

LORIS

Desktop

LORIS / L1-regularized LOgistic Regression based protein-protein Interaction Sites predictor

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Identifies interaction residues, using sequence features and is implemented via the L1-logreg classifier. LORIS can predict proteins having different types of amino acid groups. With this tool, there…

PINGU

Desktop

PINGU / PredIction of eNzyme catalytic residues usinG seqUence information

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Assists users to perform catalytic residue predictions with improved precision by using physicochemical properties and evolutionary information from enzyme sequences. PINGU is construct around a…

MOWGLI

Desktop

MOWGLI / protein-MannOse interacting residues With ensemble classifiers usinG evoLutionary Information

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Assists users to identify mannose interacting residues using evolutionary information in an ensemble of random forest classifiers. MOWGLI is a program that can be used for predicting…

AFP-PseAAC

Desktop

AFP-PseAAC

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Assists users to detect antifreeze proteins (AFPs). The AFP-PseAAC consists of support vector machines-based predictor that uses Chou's pseudo amino acid composition for identifying AFP. This…

DORAEMON

Desktop

DORAEMON / conDitiOnal pRobabilistic Approach for idEntification of aMino acids interacting with ribONucleic acids

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Allows analysis and identification of protein-RNA interaction complexes. DORAEMON is based on a conditional probabilistic approach in a non-numeric feature space. It was designed to be applied in…

SPRINGS

Desktop

SPRINGS / Sequence-based predictor of PRotein-protein interactING Sites

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A computational approach using artificial neural networks for predicting protein-protein interaction sites based on evolutionary conservation, averaged cumulative hydropathy and predicted relative…

Fields of interest

RNA-seq analysis
Allows users to process ChIP-seq data sets from raw reads to accurate…
Analyzes structural variants (SVs) and allele-specific copy numbers of genomic…
Serves for studying differential RNA editing. DRETools is able to find…
Gene expression microarray analysis
Predicts de novo profile generation based on sequence context. SPBuild…
Assists users for visualizing ancestry data. AncestryView first proceeds by…
Provides a pattern recognition for cell-free DNA (cfDNA). CfdnaPattern is an…
Protein interaction analysis
Assists users with virtual screening. BindScope is a web GPU-accelerated…
Generates complementary networks of pathways linked to a specific biological…
Provides an application for robust integration of heterogeneous data with…