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Thahmina Ali - Perform exceptional computational biology and data science research.
Open to new opportunities
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Open to new opportunities

Thahmina Ali

Perform exceptional computational biology and data science research.
City University of New York • Hunter College • New York City • United States of America

Skills and expertise

Fields of interest
  • Drug design
  • RNA-seq analysis
  • Protein interaction analysis
Languages
  • English
Programming languages
  • MATLAB
  • Perl
  • Python
  • R
  • Shell (Bash)

TOOLS MAINTAINED

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TED toolkit

Web

TED toolkit / Transcriptomics profiler for Easy Discovery toolkit

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Allows users to process and analyze RNA-seq data. Serves for transcriptomic profiling as a clinically-oriented application. TED toolkit is an application that is divided in several modules: (1) the…

Fields of interest

Drug design
Displays and investigates molecular structures, density maps, 3D microscopy,…
Constructs target prioritization and drug repositioning hypotheses that are…
Provides an atom pair contribution (APC) model. APC Method can predict the…
RNA-seq analysis
Estimates species trees given a set of rooted gene trees. DynaDup is based on…
Fragments pathways into functional modules and uses these to predict…
Assists users in studying allele-specific expression (ASE) within individual…
Protein interaction analysis
Assesses the native-likeness of designed or predicted protein-ligand…
Allows protein-protein interaction (PPI) interface prediction. PPIprediction is…
Allows users to predict heme binding residues (HEMEs). For HEMEsPred, several…