Unlock your biological data

?
Tom Warnke's avatar image
Tom Warnke - Software Developer & Computer Science PhD Student
Tom Warnke's avatar image
Upload a photo

Tom Warnke

Software Developer & Computer Science PhD Student
University of Rostock • Rostock • Germany

Skills and expertise

Fields of interest
  • Synthetic biology
  • MS-based untargeted metabolomics
  • Protein interaction analysis
Languages
  • English
  • German
Programming languages
  • Java
  • Scala

TOOLS MAINTAINED

SESSL

Desktop

SESSL

(0) 0 discussion(s)
Provides an alternative way of specifying simulation experiments. SESSL is a domain-specific language developed as binding for ML-Rules and adds an easy-to-use interface for running simulations with…

ML-Rules

Desktop

ML-Rules

(0) 0 discussion(s)
Permits simulating and specifying complex systems biology models at multiple levels of organization. ML-Rules is a rule-based modeling language for dynamically nested biochemical reaction networks.…

Fields of interest

Synthetic biology
Allows modular assembly of Golden Gate-compatible cloning broad-host range…
Deduces the "lab-of-origin" of DNA sequence datasets. predict-lab-origin is an…
Aims to assemble multiple DNA fragments in a single reaction using a…
MS-based untargeted metabolomics
Identifies metabolites from untargeted liquid chromatography-mass spectrometry…
Permits metabolite identification from both unlabeled and stable-isotope…
Assists users for the enumeration of flux top (FTs). FTA is a mathematical…
Protein interaction analysis
Predicts RNA protein interaction via extreme gradient boosting classifier named…
Allows users to select characteristics from multi-omics data. CCAFS is a…
Estimates interaction partners from sequence data among the paralogous proteins…