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Panagiotis Tsiakanikas - Cancer Biomarkers
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Panagiotis Tsiakanikas

Cancer Biomarkers
National and Kapodistrian University of Athens • Athens • Greece

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • RNA-seq analysis
Languages
  • English
  • German
Programming languages
  • Perl

Fields of interest

WGS analysis
Simulates different types of substitutions. MultinomialMutations integrates the…
Identifies, classifies and annotates transposable elements (TEs) of non-model…
Produces maximum-likelihood phylogenetic trees and their associated distance…
De novo sequencing analysis
Predicts de novo profile generation based on sequence context. SPBuild…
Evaluates RNA-seq alignment results. RNAseqEval is a package that can be used…
Simplifies the execution of existing short read aligners (SRA) on…
RNA-seq analysis
Enhances sequencing depth in low coverage areas with CIGAR string correction.…
Predicts protein-coding potential on transcripts. mRNN is capable of learning…
Discovers low-rank biclusters within a large data-matrix. This method can be…