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Naoki Tsukuda - metagenome, human gut microbiome
Open to new opportunities
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Open to new opportunities

Naoki Tsukuda

metagenome, human gut microbiome
Yakult Honsha (Japan) • Tokyo • Japan

Skills and expertise

Fields of interest
  • WGS analysis
  • Metagenomic sequencing analysis
  • Gene expression array analysis
Languages
  • English
  • Japanese
Programming languages
  • C
  • R
  • Ruby
  • Shell (Bash)

Fields of interest

WGS analysis
Assists users in inferring the demographic history of populations from the…
Refines regulatory motifs. LMMO consists of a large-margin-type algorithm that…
Allows users to perform de novo discovery of k-mer set memories (KSMs). KMAC is…
Metagenomic sequencing analysis
Enables decomposition of a gene tree into trees consistent with a species tree.…
Corrects long read hybrid errors. HG-CoLoR combines both (i) the idea to…
Provides a tool for ortholog identification. JustOrthologs focuses on orthologs…
Gene expression array analysis
Permits the construction of tumor-cell specific gene/protein co-expression…
Permits removing electrical stimulation artifacts from multielectrode array…
Enables spatial mapping of RNA-seq transcript data onto high resolution tissue…