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Umut Agyuz - PhD candidate
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Umut Agyuz

PhD candidate
Boğaziçi University • Istanbul • Turkey

Skills and expertise

Fields of interest
  • WES analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • English
Programming languages
  • R

Fields of interest

WES analysis
Performs common tasks in metagenomic data analysis from raw read quality…
Compresses coordinate sorted aligned SAM, BAM or CRAM files. Crumble is a…
Computes positively selected candidate variants for functional follow-up.…
RNA-seq analysis
Identifies differentiation pathways in single-cell transcriptome data. GraphDDP…
Performs a structural annotation of protein-coding genes. TGFam-Finder…
Provides a read alignment software for whole genome sequencing (WGS). CS-BWAMEM…
Gene expression array analysis
Analyzes the association of gene expression indices with interval times. GAIT…
Allows clustering of large-scale networks. HipMCL is a distributed-memory…
Recognizes spatiotemporal relationships in the human brain. brainImageR offers…