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Unai López de Heredia Larrea - Forest Genetics/bioinformatics
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Unai López de Heredia Larrea

Forest Genetics/bioinformatics
Universidad Politécnica de Madrid

Skills and expertise

Fields of interest
  • De novo sequencing analysis
  • RNA-seq analysis
  • Gene expression array analysis
Languages
  • English
Programming languages
  • Python

TOOLS MAINTAINED

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NGScloud

Desktop

NGScloud

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Performs RNA-seq data analysis through the Elastic Compute Cloud (EC2) service. NGSCloud is a platform allowing users to: (i) generate, view composition, and manipulate clusters and its associated…

ddradseqtools

Desktop

ddradseqtools

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Enables design and in silico testing of ddRADseq experiments. Ddradseqtools is a set of programs, configuration files and data that consists of three steps: (1) library construction/in silico…

Fields of interest

De novo sequencing analysis
Exploits matrix factorization for gene prioritization. This method leans on an…
Assists users in pre-processing of read data. BLR is a library preparation…
Allows users to return all read mappings within a given edit distance. FEM is…
RNA-seq analysis
Identifies RNA editing sites based on RNA-seq data in organelles based on…
Classifies biological sequences based on the feature extraction from complex…
Detects prognostic biomarkers and gene modules. G2Vec is a network-based deep…
Gene expression array analysis
Permits cluster identification using ensemble clustering. diceR assists users…
Enables the application of gene set tests (GST) in the absence of large parts…
Allows clustering of large-scale networks. HipMCL is a distributed-memory…