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Vadim Puller - Computational biologist
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Vadim Puller

Computational biologist
University of Basel • Basel • Switzerland

Skills and expertise

Fields of interest
  • WGS analysis
  • Metagenomic sequencing analysis
  • MS-based untargeted metabolomics
Languages
  • English
Programming languages
  • MATLAB
  • Python

Fields of interest

WGS analysis
Exploits identity by descent (IBD) information to generate genotype imputation…
Integrates prior knowledge to learn mixed graphical models. piMGM provides an…
Consists of a multiple sequence alignment (MSA) tool based on T-Coffee (TC) to…
Metagenomic sequencing analysis
Automatically combines transcriptomes from difference sources, such as assembly…
Assists users in optimized block trimming. This algorithm is a polynomial-time…
Serves for visual knowledge exploration in molecular interaction networks. This…
MS-based untargeted metabolomics
Consists of a filtering approach for the linear noise approximation (LNA) in…
Explains the activity of metabolic modules. Metabolizer takes into account the…
Permits metabolite identification from both unlabeled and stable-isotope…