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Vagelis Karatzas - phd, gene network signatures and drug repurposing on idiopathic pulmonary fibrosis
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Open to new opportunities

Vagelis Karatzas

phd, gene network signatures and drug repurposing on idiopathic pulmonary fibrosis
National and Kapodistrian University of Athens • Athens • Greece

Skills and expertise

Fields of interest
  • RNA-seq analysis
  • Gene expression array analysis
  • Protein interaction analysis
Languages
  • English
Programming languages
  • Java
  • MATLAB
  • R

Fields of interest

RNA-seq analysis
Serves for alternative splicing quantification and downstream dimensionality…
Allows users to distinguish human and mouse reads in High-Throughput Sequencing…
Examines epigenomic and transcriptomic next generation sequencing (NGS) data.…
Gene expression array analysis
Calculates average amino-acid identity (AAI) between a query proteome and all…
Allows clustering of large-scale networks. HipMCL is a distributed-memory…
Serves for processing Infinium DNA methylation data. SeSAMe consists of light…
Protein interaction analysis
Models peptide conformations and sequent global sampling of binding…
Offers a toolbox dedicated to the valuation of gene regulatory networks (GRNs).…
Provides a logic-based framework to reconstruct signaling networks by using…