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Virginie Calderon - Head of the bioinformatics core facility
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Virginie Calderon

Head of the bioinformatics core facility
Montreal Clinical Research Institute  • Montréal • Canada

Skills and expertise

Fields of interest
  • WGS analysis
  • WES analysis
  • RNA-seq analysis
Languages
  • English
  • French
Programming languages
  • Perl
  • PHP
  • Python
  • R
  • Shell (Bash)

Fields of interest

WGS analysis
Integrates predictions of several popular scores (SIFT, Polyphen-2, LRT,…
Consists of a statistical mixture of different genotyping error profiles. Geck…
Provides a collection of open-source tools and resources for modelling,…
WES analysis
Maps bisulfite-treated short DNA reads to a reference genome. BisPin supports…
Identifies and validates deletion structural variation (SV) in trios with whole…
Employs gene expression heterogeneity to identify genes relating to biological…
RNA-seq analysis
Consists of an algorithm that integrates biological information to search…
Predicts transcriptomic structural variants (TSVs) from RNA-seq data. SQUID is…
Allows users to return all read mappings within a given edit distance. FEM is…