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Vitor C. Piro - Metagenomics
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Vitor C. Piro

Metagenomics
Robert Koch Institute • Berlin • Germany

Skills and expertise

Fields of interest
  • WGS analysis
  • De novo sequencing analysis
  • Metagenomic sequencing analysis
Languages
  • English
Programming languages
  • Python
  • Shell (Bash)

TOOLS MAINTAINED

genome_updater

Desktop

genome_updater

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Provides an automatic download and update genome and sequences files from NCBI. genome_updater is a Shell script that keeps log and version for each update.

FGAP

Web
Desktop

FGAP

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An efficient tool to find regions to fill gaps of draft genome sequences. FGAP demands low computational resources, the results can be easily analyzed by the output generated, and it can be used for…

Fields of interest

WGS analysis
Permits to evaluate pleiotropy in a standard mendelian randomization (MR)…
Serves for mosaic aneuploidy detection and quantification by using next…
Assists users in annotating TP53 information derived from sequencing data.…
De novo sequencing analysis
Annotates and filtrates variant files. VarAFT allows the comparison of several…
Enables hierarchical multi-step assembly of large DNA fragments. MetClo uses…
Categorizes organisms of interest into species by exploiting genomic…
Metagenomic sequencing analysis
Assists users in reading TIGER-rate file or other rate files. RatePartitions…
Investigates metabolites and their combinations in diseases. The program is…
Generates clustering trees and provides a visualization feature for…