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Nan Xiao - Genomic Data Scientist
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Nan Xiao

Genomic Data Scientist
Seven Bridges Genomics (United States) • Cambridge • United States of America

My research focuses on developing scalable statistical machine learning methods with software to detect key signals and reveal meaningful patterns from high-dimensional data. My Erdős number: 4.

I am an active contributor to the R and…

Skills and expertise

Fields of interest
  • Drug design
  • Genome edition
  • RNA-seq analysis
Languages
  • Chinese
  • English
Programming languages
  • Haskell
  • Javascript
  • Python
  • R

Favorites and Collections

Favorites

Rcpi
Desktop
protr/ProtrWeb
Desktop
Web
ggsci
Desktop

Bioinformatics projects

TOOLS MAINTAINED

MSA-Enet

Desktop

MSA-Enet / Multi-Step Adaptive Elastic-net

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Reduce the false positives in high-dimensional variable selection while still maintaining the estimation accuracy. MSA-Enet was applied on a high-dimensional variable selection problem of motif…
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hdnom

Web
Desktop

hdnom

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Offers a freely available R package, a web application, and an online prediction tool maker. hdnom is an open-source software package which streamlined the workflow of high-dimensional Cox model…

ggsci

Desktop

ggsci

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Offers a set of 'ggplot2' color palettes. ggsci is inspired by plots in scientific journals, data visualization libraries, science fiction movies, and TV shows to provides visual figures.

Fields of interest

Drug design
Aims to create models. gPKPDSim offers a means to simplify the use of…
Performs de novo prediction of structural properties of proteins. rawMSA leans…
Conducts simulations of models of bacteria, antibiotics, enzymes, and their…
Genome edition
Processes batch analysis of CRISPR edits using Sanger data. ICE can quantify…
Identifies, quantifies and visualizes genuine genome editing events form CRIPR…
Assesses deep-sequencing data from clustered regularly interspaced short…
RNA-seq analysis
Finds differentially expressed (DE) genes that avoids some of the shortcomings…
Predicts transcriptomic structural variants (TSVs) from RNA-seq data. SQUID is…
Stores projects and creates a directory of analysed results and parameter.…